Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0245.Seq
         (906 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    24   1.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   5.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.6  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 76  ILKKPLKVIRNKKGRTNCKHYKIT*SILFKAD 171
           ++   LK+ +N+   T CK + I  ++LF A+
Sbjct: 340 VISSALKLSQNELEITACKFFSIDNALLFSAN 371


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 158 YLKLIRKCNRCLHVLPQQQF*XILTKLVWT 247
           Y +L+  C +   +   Q    ILT L+WT
Sbjct: 218 YSQLVFMCKKINKLYGHQLLLTILTYLIWT 247


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 76   ILKKPLKVIRNKKGR 120
            ++KK  KV+R+++GR
Sbjct: 2111 VIKKGWKVVRDRRGR 2125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,223
Number of Sequences: 336
Number of extensions: 3256
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)