Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0229.Seq
         (901 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    25   0.61 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    25   1.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.9  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 473 GGPVPNSPYSESITIHWPSFYNVV 544
           G P+P   Y+E+ T  W S +N V
Sbjct: 246 GDPIPYIQYTETETKTWGSVFNTV 269


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 68  VHXQYLPLSRVVHHLHVVAFG 6
           ++ QYLP+ R + H+ + +FG
Sbjct: 169 MNLQYLPMDRQLCHIEIESFG 189


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 43  LNGRYXXWTRSLRSRWKXFPLDHRLR 120
           +N  Y   TR +   WK  P D+R R
Sbjct: 217 VNSLYQNATRKVCGVWKRIPHDYRKR 242


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 492 RPIVSRLQFTGRRFTTS 542
           RP V    F G+RFT S
Sbjct: 343 RPFVCNWLFCGKRFTRS 359


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,411
Number of Sequences: 336
Number of extensions: 4512
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)