Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0219.Seq
         (930 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    29   0.039
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.9  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 29.5 bits (63), Expect = 0.039
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 629 TQLHNFFTKKISFVYTMKRNVGNVK*HLCLQSFGLLTVN 513
           T + +FF K+  +++T      N+   LCL +FGLL VN
Sbjct: 177 TGVEHFFKKQFHYIFTYMPY--NIVFGLCLTTFGLLPVN 213


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 158 YQKSLGKFR*IAKRNKFL-GLLEEPGVNTHGCPSRE 54
           YQ+ L  +R +    KF  G  E+P V T G PSR+
Sbjct: 501 YQQ-LSNYRNVDNSAKFKDGFQEQPNVVTVGNPSRK 535


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 701 YNYIFTYSHIKFGVIIVHN 645
           Y Y F   H+ +GV+I+++
Sbjct: 116 YYYAFFGVHLAYGVVIIYS 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,082
Number of Sequences: 336
Number of extensions: 4808
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)