Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0204.Seq
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    28   0.084
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.8  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.2  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   4.2  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   7.3  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 0.084
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  KTQQWVTSKTHTLRPETPGPQPPS 108
           +T  W++S +  + P TP P PPS
Sbjct: 102 RTDDWLSSPSGNVPPLTPSPGPPS 125


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 651 WXFXXRGAPSPSLTSLAIPS 710
           W    +GAPSPS T  ++P+
Sbjct: 67  WKKSPQGAPSPSSTPSSLPT 86


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 138 GFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFN 248
           GF+++     KIV +S +     GH +  L+G  IFN
Sbjct: 114 GFLLILTPNGKIVFVSHTVEHLLGHLQTDLMGQSIFN 150


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 79   PETPGPQPPSPCNXRPCVKMVSLC*RVVH 165
            P+  GPQP S C+          C R +H
Sbjct: 1268 PKMGGPQPYSACSENAFAAYPGDCTRYLH 1296


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 69  VCLRCHPLLC 40
           +C+RCH  LC
Sbjct: 234 ICMRCHDQLC 243


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 97  EAPESPVSKCVSSMSPIVV 41
           EAP  PV + + S++P+V+
Sbjct: 55  EAPCDPVGRRLKSLAPLVL 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,343
Number of Sequences: 336
Number of extensions: 3580
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)