Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0101.Seq
         (870 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   4.1  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   9.5  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   9.5  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 469 RRCKTTASEL*YDSL*GELGTGPPLEKMGESLSTIC*STFAWISRWWIN 323
           R     ASE+  +     L    P E+  E L+  C  T + +S W+ N
Sbjct: 235 RNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGN 283


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 142 LFYCNNVLKQNISVII 95
           LFYC   +KQ+I  +I
Sbjct: 19  LFYCYKTIKQHIYSLI 34


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 142 LFYCNNVLKQNISVII 95
           LFYC   +KQ+I  +I
Sbjct: 19  LFYCYKTIKQHIYSLI 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,359
Number of Sequences: 336
Number of extensions: 3207
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)