Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0095.Seq
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.075
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   6.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.075
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 337 RNNFSIRYWSWNYRGCWHQTC 399
           R+NF   +  WNY  CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +1

Query: 340  NNFSIRYWSWNYRGCWHQTC 399
            NNF      W Y  CW   C
Sbjct: 1935 NNFDGLDLDWEYPKCWQVDC 1954


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +1

Query: 346 FSIRYWSWNYRGCWHQ 393
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 645 ADHXKDASPVLDHAICKS 698
           +DH    SP +DH  C S
Sbjct: 4   SDHFDRESPNIDHNSCSS 21


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 7/18 (38%)
 Frame = -1

Query: 340 CGXKARSCICAPRCRCTH 287
           C    R   C   C CTH
Sbjct: 553 CNGDNRPADCQQNCMCTH 570


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,343
Number of Sequences: 336
Number of extensions: 2804
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)