Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0092.Seq
         (848 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   1.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   4.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.3  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 416 DAIHNALLDALAVVKRRTLITTCTMMITSKKLRT*RPCSDSRV 544
           DA    +LD L V+KR        M +  KK  T R C D+R+
Sbjct: 322 DATIQEMLD-LGVIKREASPYASPMTVGKKKDGTVRICLDARM 363


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 83  LMELARHSANRAPTTSTQATPRATPA 160
           L++   H+ +   + +T+ TPR TPA
Sbjct: 273 LIQRRTHTRHTTTSHNTRGTPRTTPA 298


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 521 RPCSDSRVSLHSIPRTRS 574
           R C+ S VSLHS+   RS
Sbjct: 17  RKCTVSNVSLHSLKNKRS 34


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 102 TARTGLLPPQHKQHREQRR 158
           TA  G LPPQ    R QRR
Sbjct: 266 TAGAGGLPPQVPSPRSQRR 284


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 219 ANPGCGPKIGEL 184
           A+PGCGP  G L
Sbjct: 388 ASPGCGPGQGGL 399


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 219 ANPGCGPKIGEL 184
           A+PGCGP  G L
Sbjct: 388 ASPGCGPGQGGL 399


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,040
Number of Sequences: 336
Number of extensions: 3565
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)