Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0076.Seq
         (860 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   7.2  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    21   9.5  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 20/77 (25%), Positives = 26/77 (33%)
 Frame = -1

Query: 290 QPDSKERPSRRDLRRYGXGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVL 111
           QP +   P    L  YG G  Y   A  K     S    KA   EH  + Y  K    +L
Sbjct: 61  QPTTGYYPYDPALAAYGYGAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIML 120

Query: 110 GYIPVRSPLLRKSWLVS 60
             I   +     +W  +
Sbjct: 121 AIITKMTLTQVSTWFAN 137


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 727 LGLPNVXRAKNRYQGRLAHLXETIH 801
           L L +  R++ RYQGR++ L   I+
Sbjct: 38  LPLRSFYRSRIRYQGRISSLILPIY 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,552
Number of Sequences: 336
Number of extensions: 3686
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)