Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0074.Seq
         (583 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    26   0.20 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.47 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   4.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.6  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   7.6  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   7.6  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 329 FEWINEIPTVPI 294
           F W+NEIPT+P+
Sbjct: 319 FYWLNEIPTMPV 330


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 71  RNNFSIRYWSWNXRGCWHQTC 133
           R+NF   +  WN   CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +3

Query: 318 NPFEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGA 434
           NP  + ++    +LV+  +  L   P+  +P     PGA
Sbjct: 111 NPLPSPRRVAVPVLVRDGKPCLSGGPKHPDPGSLQVPGA 149


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 305 TVPIYYLAKPHPRK 264
           TV  Y+   PHP K
Sbjct: 341 TVDDYFFCSPHPHK 354


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -2

Query: 345 FPSLRLRMD*RDSHCPYLLSSETTSKEGSRPQITHSR 235
           FP+ ++R+   D    Y+L  +  + +  R +  +SR
Sbjct: 3   FPAFKVRVSGLDKKSKYILLMDIVAADDCRYKFHNSR 39


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -2

Query: 345 FPSLRLRMD*RDSHCPYLLSSETTSKEGSRPQITHSR 235
           FP+ ++R+   D    Y+L  +  + +  R +  +SR
Sbjct: 3   FPAFKVRVSGLDKKSKYILLMDIVAADDCRYKFHNSR 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,004
Number of Sequences: 336
Number of extensions: 2473
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)