Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0138
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   2.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.2  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   9.1  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 415 SACLIIINDYLLYSCIHFS*IIIWTVYITF 504
           + CL+ +N Y  +  + +  I++ T  I F
Sbjct: 21  TVCLVPLNPYQFFLAVQYPRIVVSTFNIVF 50


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/61 (19%), Positives = 30/61 (49%)
 Frame = +2

Query: 434 LMIICCIRVYILVK*LFGQYI*HLCMLLFKSILIYIFNF*MIVSLHNMVA*NIGWSYYVC 613
           L+ + CI  +     +F  ++   C+L+    + Y +   ++ ++H ++   I + YY+ 
Sbjct: 206 LLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMH 265

Query: 614 L 616
           L
Sbjct: 266 L 266



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 218 FYNLSVLFLIINMQYCLIMI 277
           FY+  ++F I  + YC+++I
Sbjct: 215 FYSAFIIFTIHLLFYCVLII 234


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 553 LKIKYIYKDTF 521
           +K+ Y+Y+DTF
Sbjct: 312 MKVPYMYEDTF 322


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,339
Number of Sequences: 336
Number of extensions: 3198
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)