Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0126
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    33   0.002
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       29   0.036
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.79 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 262 STGGHYRCQCPSGVTGKHCDVIPAN 188
           S GG Y C CPSG  G +C++   N
Sbjct: 394 SDGGGYICDCPSGTNGTNCEIDTIN 418



 Score = 31.1 bits (67), Expect = 0.009
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = -3

Query: 250 HYRCQCPSGVTGKHC----DVIPANMTTTEASTVQ 158
           HY C CP G TGK C    D    N    +A+ VQ
Sbjct: 82  HYTCHCPYGYTGKDCGEYVDWCSTNPCENQATCVQ 116



 Score = 28.7 bits (61), Expect = 0.048
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 253 GHYRCQCPSGVTGKHCDV 200
           G Y C+CP G  G++C++
Sbjct: 204 GSYSCKCPKGFQGQNCEL 221



 Score = 28.3 bits (60), Expect = 0.064
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 253 GHYRCQCPSGVTGKHCDV 200
           G Y C CP   TGK+C++
Sbjct: 437 GDYACYCPPKHTGKNCEI 454



 Score = 26.6 bits (56), Expect = 0.19
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 327 ELNYCEDHPDTCKNGGQCQSL 265
           ELN  +  P+ C+NGG C  L
Sbjct: 220 ELNVDDCKPNPCQNGGTCHDL 240



 Score = 26.2 bits (55), Expect = 0.26
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 247 YRCQCPSGVTGKHCDV 200
           Y+C C  G TGK CDV
Sbjct: 121 YQCLCGVGWTGKVCDV 136



 Score = 26.2 bits (55), Expect = 0.26
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 253 GHYRCQCPSGVTGKHCD 203
           GH +C CP G  GK+C+
Sbjct: 359 GH-KCTCPEGFYGKNCE 374



 Score = 25.4 bits (53), Expect = 0.45
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 253 GHYRCQCPSGVTGKHCD 203
           G + C+CP G  G  C+
Sbjct: 280 GGFECKCPPGFVGPRCE 296



 Score = 25.4 bits (53), Expect = 0.45
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 247 YRCQCPSGVTGKHCD 203
           Y C C  G  G+HC+
Sbjct: 322 YHCNCKLGFMGRHCE 336



 Score = 25.0 bits (52), Expect = 0.59
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 327 ELNYCEDHPDTCKNGGQCQSLEA 259
           ++N+C   P  C+NGG C ++ A
Sbjct: 338 KVNFCATSP--CQNGGVCTTIHA 358



 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 247 YRCQCPSGVTGKHCDVIPANMTTT 176
           Y C CP G +G +C     + T T
Sbjct: 7   YTCTCPLGFSGINCQTNDEDCTET 30



 Score = 24.6 bits (51), Expect = 0.79
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 247 YRCQCPSGVTGKHCDV 200
           + C CPSG  G  C++
Sbjct: 244 FSCSCPSGTLGYICEI 259



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 327 ELNYCEDHPDTCKNGGQC 274
           E+N  +  P  C N G C
Sbjct: 258 EINVDDCRPGACHNNGTC 275


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 0.036
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 268 VGSTGGHYRCQCPSGVTGKHC 206
           V   G  +RCQC  G TGK+C
Sbjct: 45  VNLPGVGHRCQCQPGFTGKYC 65



 Score = 27.1 bits (57), Expect = 0.15
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 321 NYCEDHPDTCKNGGQCQSL 265
           ++C DH  TCKNGG CQ L
Sbjct: 146 SHC-DHT-TCKNGGTCQDL 162



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -3

Query: 247 YRCQCPSGVTGKHCDV 200
           + C C +G  GK C +
Sbjct: 128 FECNCKNGWKGKTCSL 143


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 205 DVIPANMTTTEASTVQEFTVEVITDDGSAENTSDKTTTVAEPNIDENE 62
           DVIP +      +T  +   +  T D S+   SDK  T    +++ N+
Sbjct: 21  DVIPPHYNIHHGATPPQSPNQQYTKDCSSPTPSDKLNTSTTSSVNVND 68


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 196 PANMTTTEASTVQEFTVEVITDDGSAENTSDKTTT 92
           P++ +  E +T +   + VI DD         TTT
Sbjct: 313 PSSSSNQEKTTTESAKISVIQDDAQMRLNKHVTTT 347


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +3

Query: 126 PSSVITSTVNSWTVLAS 176
           P++V++ T+N W++ +S
Sbjct: 313 PTTVMSPTINCWSLTSS 329


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 226 GVTGKHCDVIPANMTTT 176
           GVTG H  + P+ + TT
Sbjct: 215 GVTGHHSGLYPSAVDTT 231


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 241 IYSVRLCFQRLTLSTVFACIRMVFTVI*FWKYIFL 345
           IY     F   T+  +F C+ ++   I ++ Y F+
Sbjct: 212 IYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFI 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,791
Number of Sequences: 336
Number of extensions: 3571
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)