Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0116X.Seq
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    27   0.054
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    27   0.054
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    21   4.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   8.1  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 0.054
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 192 EVGLIQECAFSGIVRHKVCVVQRAVYTKQ 106
           +V LIQ CAF  +++ K CVV +  Y KQ
Sbjct: 178 QVMLIQFCAFVVVLKQKFCVVNQ--YIKQ 204


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 0.054
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 192 EVGLIQECAFSGIVRHKVCVVQRAVYTKQ 106
           +V LIQ CAF  +++ K CVV +  Y KQ
Sbjct: 3   QVMLIQFCAFVVVLKQKFCVVNQ--YIKQ 29


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 313 LPSRVTSRSRHXGDRPARRR 372
           +P R+  R RH GD+P + R
Sbjct: 20  VPQRL--RIRHHGDKPPQER 37


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 389 MSQSGDRRRAGRSP 348
           +SQS +RRRA  +P
Sbjct: 179 LSQSPNRRRASSNP 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,773
Number of Sequences: 336
Number of extensions: 1563
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)