Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0113.Seq
         (534 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   0.97 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   1.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.0  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 6   HHRSPVQPVAACRKR 50
           HH++P++PVA   KR
Sbjct: 61  HHKAPIRPVALPPKR 75


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 184 DFLAMNPNGLVPLLRDDESDLILWNQTPLSAIWRHSTGK 300
           D + M P G +  +  DE  +  WN TP    +    GK
Sbjct: 363 DIVNMLPKGEIFHMGGDEVYIPCWNATPEIITYLEKNGK 401


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 510 LLFPVPHRAGKTGRRTLCNWHQW 442
           LL P P   GKTGR+T+   +++
Sbjct: 299 LLGPHPTYFGKTGRKTVLKTNKY 321


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 396  ESRDEHY*ASGLPSPSIFPLPHDVPVSRST 307
            E+ + H  AS   +PS  P+  D PV+ +T
Sbjct: 2280 ENTECHPDASSTMAPSTTPMVPDKPVTTTT 2309



 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 187 FLAMNPNGLVPLLRDDESDLI 249
           F  ++P+    +  DDESD+I
Sbjct: 211 FATIDPHNFNMISNDDESDII 231


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 269 CPLSGGTVRAKTPVDRLTGTSCGSG 343
           CPL    +  +T  +  T TSC +G
Sbjct: 11  CPLGFSGINCQTNDEDCTETSCMNG 35


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 362 CPVHPFFRFR 333
           CP+HP   FR
Sbjct: 155 CPIHPGMTFR 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,045
Number of Sequences: 336
Number of extensions: 3035
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)