Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0065.Seq
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   6.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   6.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.5  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 664 RPPTKVVSTPFGRVFLWQGCYRTK 735
           RPP KV  TP+G   +W    +TK
Sbjct: 84  RPP-KVYPTPYGGRLVWTLPGKTK 106


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 664 RPPTKVVSTPFGRVFLWQGCYRTK 735
           RPP KV  TP+G   +W    +TK
Sbjct: 398 RPP-KVYPTPYGGRLVWTLPGKTK 420


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 664 RPPTKVVSTPFGRVFLWQGCYRTK 735
           RPP KV  TP+G   +W    +TK
Sbjct: 631 RPP-KVYPTPYGGRLVWTLPGKTK 653


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 664 RPPTKVVSTPFGRVFLWQGCYRTK 735
           RPP KV  TP+G   +W    +TK
Sbjct: 631 RPP-KVYPTPYGGRLVWTLPGKTK 653


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 713 QRKTRPKGVETTFVG 669
           +RKT P GV TT  G
Sbjct: 301 RRKTNPAGVTTTTKG 315


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 713 QRKTRPKGVETTFVG 669
           +RKT P GV TT  G
Sbjct: 301 RRKTNPAGVTTTTKG 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,081
Number of Sequences: 336
Number of extensions: 4966
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)