Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F02f
         (362 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   0.55 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.3  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   2.9  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   9.0  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 115 LFAYLVI*RIFDCC 74
           LF Y +I  IFDCC
Sbjct: 240 LFGYQIILVIFDCC 253



 Score = 23.4 bits (48), Expect = 0.73
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 263 ICKKIYTAVLHKKHIFLCKNCKGIYIFG 180
           + K  Y   + K+ +FLC +  GI +FG
Sbjct: 133 LMKNFYFWFVLKQVMFLCYSTYGIQVFG 160


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +2

Query: 170 WFSSQKYKSPY-SSC 211
           W S + +KSPY +SC
Sbjct: 379 WMSGESFKSPYKASC 393



 Score = 20.2 bits (40), Expect = 6.8
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = -3

Query: 81  IVVTSILKRFKINGNVIFCT 22
           + V  +LK   + G  + CT
Sbjct: 256 LTVMQVLKEMAMTGKTVICT 275


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +2

Query: 170 WFSSQKYKSPY-SSC 211
           W S + +KSPY +SC
Sbjct: 379 WMSGESFKSPYKASC 393



 Score = 20.2 bits (40), Expect = 6.8
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = -3

Query: 81  IVVTSILKRFKINGNVIFCT 22
           + V  +LK   + G  + CT
Sbjct: 256 LTVMQVLKEMAMTGKTVICT 275


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 266 SICKKIYTAVLHKKHIFLCKNCK 198
           S CK     V++KK+   CK C+
Sbjct: 40  SECKNNGECVINKKNRTACKACR 62



 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 180 DENHCLHNQILRCRCKTLHDNNCLLI 103
           +   C+ N+  R  CK      CLL+
Sbjct: 44  NNGECVINKKNRTACKACRLRKCLLV 69


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 96  FKEYLIVVTSILKR 55
           F  Y+IVVT+  KR
Sbjct: 78  FNYYVIVVTTFYKR 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,786
Number of Sequences: 336
Number of extensions: 1863
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)