Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E12f
         (478 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.7  
AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    21   7.7  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.7  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 410 LWNVNNFKLTRK 375
           LWN+NN +L  K
Sbjct: 829 LWNINNKRLEPK 840


>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 439 AQIIDQVAEFCGML 398
           AQ  DQ++E CGML
Sbjct: 10  AQEGDQLSEECGML 23


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 439 AQIIDQVAEFCGML 398
           AQ  DQ++E CGML
Sbjct: 10  AQEGDQLSEECGML 23


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 439 AQIIDQVAEFCGML 398
           AQ  DQ++E CGML
Sbjct: 10  AQEGDQLSEECGML 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,910
Number of Sequences: 336
Number of extensions: 1857
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)