Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E07f
         (447 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   2.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    20   9.3  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 202 ICAPTTPCAWT 234
           IC P T C+WT
Sbjct: 142 ICYPLTYCSWT 152


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -1

Query: 288 AESVCHVSLYHLRNWRINSPGARSSRGANYGLISRCLCHFCGSRRFCCF 142
           AES    S+Y   + R  +  A + +G +  LI +       SR F  F
Sbjct: 275 AESGVDTSIYTAHSTRHAATSAAARKGISLDLIRKTAGWSATSRVFATF 323


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin
          deacetylase 1 protein.
          Length = 534

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 31 MRQSILLILAVCA 69
          ++Q  L ILA+CA
Sbjct: 3  LKQGALFILAICA 15


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,543
Number of Sequences: 336
Number of extensions: 1595
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)