Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0110
         (795 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    77   1e-16
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    23   3.7  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    23   3.7  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   3.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 77.4 bits (182), Expect = 1e-16
 Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
 Frame = +3

Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIR 434
           G     Q   +  G  I++ATPGRL DF+ +G  +     Y VLDEADRMLDMGF   + 
Sbjct: 272 GTSTNHQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVE 331

Query: 435 KII-EQIRP---DRQTLMWSATWPKEVKNL 512
           +++  Q  P   +RQTLM+SAT+P+EV+ L
Sbjct: 332 EMLSHQSMPATGERQTLMFSATFPEEVQQL 361



 Score = 47.6 bits (108), Expect = 1e-07
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
 Frame = +1

Query: 64  TGSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTRELAQQIQQVAADFGHTSY 231
           TGSGKT A++LP I ++  +  PP    +   P+ ++++PTRELA QI      F + S 
Sbjct: 204 TGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNST 263

Query: 232 VRNTCVFG 255
           V+   ++G
Sbjct: 264 VKVAVIYG 271



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 24/71 (33%), Positives = 41/71 (57%)
 Frame = +2

Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
           ++LA  +L +YI I +G +  SA  ++ Q      + +K +KL  +L++      P  +T
Sbjct: 359 QQLAGKFLLNYIFIAVGIVG-SACTDVEQKFFQVSKFDKRSKLVSILEKA-----PNERT 412

Query: 683 IIFVETKRKAE 715
           +IFVETKR A+
Sbjct: 413 LIFVETKRNAD 423


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 686 IFVETKRKAENISRNIRRYGWPAVC 760
           IFV+++     I  N+    W AVC
Sbjct: 221 IFVKSRPSPATIISNVTVISWQAVC 245


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 686 IFVETKRKAENISRNIRRYGWPAVC 760
           IFV+++     I  N+    W AVC
Sbjct: 221 IFVKSRPSPATIISNVTVISWQAVC 245


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 686 IFVETKRKAENISRNIRRYGWPAVC 760
           IFV+++     I  N+    W AVC
Sbjct: 541 IFVKSRPSPATIISNVTVISWQAVC 565


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -2

Query: 704 SWFQQKLLFSHQVLDFVQFLAIIHLIYFL 618
           SW + K  F  +++ F++ +   + +YF+
Sbjct: 419 SWLKSKKEFKEELIKFIEEMLQRNDVYFV 447


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -2

Query: 704 SWFQQKLLFSHQVLDFVQFLAIIHLIYFL 618
           SW + K  F  +++ F++ +   + +YF+
Sbjct: 426 SWLKSKKEFKEELIKFIEEMLQRNDVYFV 454


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,112
Number of Sequences: 336
Number of extensions: 4776
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)