Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0100
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.5  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 261  YQQSVVLICKLCYAECSSVDHG--MISSLSNSTTKILLEPVPVSSVERLPLRSSF 103
            Y  +VV IC +CY+    V     +I  ++ +  +I ++ + + S++ L  R+ F
Sbjct: 918  YTANVVCICHVCYSTIQEVSKSGELIHKIATNDHEI-IDKIEMFSLQILNERAGF 971


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 727 GTAEAIAEVDAISCHPTQLNALLCGNGLCRTADCEPPLGCSKDC 596
           G    + +V+ +SC    L  ++    LC    CE  +G S  C
Sbjct: 128 GWTGKVCDVEMVSCKDAALRKVVPLKKLCNNGTCE-DIGNSHRC 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,019
Number of Sequences: 336
Number of extensions: 3882
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)