Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0095
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    24   1.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.3  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   7.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.9  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 27  IMANGRCLLDYKGVFYLKNSLLQFTLEVQDPDKYRLPCA 143
           I++N  C+ +  G+  L  SLL   +E+ +  K+R+  A
Sbjct: 386 IISNLDCVNEVIGIQQLSQSLLPAIVELAEDSKWRVRSA 424


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +1

Query: 304 LSSHECGIRLTNPSEEDLGLWRCGMETETET 396
           +  +E  +R+ +  +ED G+++C +  + E+
Sbjct: 368 IDHNEAVLRIESVRKEDKGMYQCFIRNDQES 398


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 156 RWSYHVRLRATSKSALVSSAIPAAKS*SLHAESRGQIRLTRLRSDLQVR 302
           RWS  V    +S     SSA+  + + SL +   G + L     DL  +
Sbjct: 4   RWSARVAPEESSSEVTSSSALVMSPANSLASTDIGDVDLEFWDLDLNAQ 52


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 161 PPKDVPCARKSVLVWIL 111
           PPK +P      LVW L
Sbjct: 660 PPKKIPTPYGGRLVWTL 676


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 161 PPKDVPCARKSVLVWIL 111
           PPK +P      LVW L
Sbjct: 660 PPKKIPTPYGGRLVWTL 676


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 161 PPKDVPCARKSVLVWIL 111
           PPK +P      LVW L
Sbjct: 660 PPKKIPTPYGGRLVWTL 676


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 161 PPKDVPCARKSVLVWIL 111
           PPK +P      LVW L
Sbjct: 660 PPKKIPTPYGGRLVWTL 676


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,736
Number of Sequences: 336
Number of extensions: 2790
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)