Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00108
         (594 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   4.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.9  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.8  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 362 KSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIVTVP 243
           + K F+ +S       +G   ++H+  R L   H++V  P
Sbjct: 254 QGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATP 293


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = +3

Query: 150 YEPYQPATNLCVSFGAPHEEATS*GFDCRGSGDSHNDVRLYKIPKMTVAALHVTEK 317
           +E   PA + C       E  +  G      GD + D+ L       V A+HV  K
Sbjct: 434 FETGLPAGSYCDVISGNAENGSCSGKTITVGGDGYADISLGANEDDGVIAIHVNAK 489


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 228 QTLTRWLLHVARQTRHRDWW 169
           QTL  WL H        DW+
Sbjct: 658 QTLAMWLNHNPNYAEVTDWY 677


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 165 PATNLCVSFGAPHEEATS*GFDCRGSGDSHNDVRLYKIPKMTVAALHVTEK 317
           PA + C       E  +  G      GD + D+ L       V A+HV  K
Sbjct: 438 PAGSYCDVISGNAENGSCSGKTITVGGDGYADISLGANEDDGVIAIHVNAK 488


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 165 PATNLCVSFGAPHEEATS*GFDCRGSGDSHNDVRLYKIPKMTVAALHVTEK 317
           PA + C       E  +  G      GD + D+ L       V A+HV  K
Sbjct: 439 PAGSYCDVISGNAENGSCSGKTITVGGDGYADISLGANEDDGVIAIHVNAK 489


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 314  FGNMKSSHRHLRYLVQS 264
            FG + S H HL  L++S
Sbjct: 1301 FGKLCSLHHHLSKLIKS 1317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,733
Number of Sequences: 336
Number of extensions: 2929
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)