Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00060
         (808 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    25   0.54 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.54 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.94 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   2.9  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   2.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.0  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 291 ERISKIFDNFYQPFMGCLKGLLMNGQQV-TRIGNAVNALRCVDNIEDGVYFEASNNTHSN 467
           E++ ++ DNF   ++ CLKG +     +  R G     L    N + G    A + +H++
Sbjct: 6   EKVHELCDNFCHRYISCLKGKMPIDLVIDERDGGKPPELTGSTNGDGGARSNADSTSHTD 65


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 291 ERISKIFDNFYQPFMGCLKGLLMNGQQV-TRIGNAVNALRCVDNIEDGVYFEASNNTHSN 467
           E++ ++ DNF   ++ CLKG +     +  R G     L    N + G    A + +H++
Sbjct: 162 EKVHELCDNFCHRYISCLKGKMPIDLVIDERDGGKPPELTGSTNGDGGARSNADSTSHTD 221


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 518 MEVRPRNTTGLLLSVH-GKKDYMVLELLDS 604
           ++  P NT G +LS+H  K D   + LL S
Sbjct: 279 LDKNPENTLGTMLSIHPSKLDVEQMNLLHS 308


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 413 DASQGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDLRNSF 291
           D S   HS+A ++HLL+  +  L+  +K ++   + +  SF
Sbjct: 214 DYSSLTHSLAASNHLLSSGQHLLQDTYKSMLPGAQTVGASF 254


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 374 HLLTVHEKSLEAAHKRLVEVVEDLRNSFVNVSQAS 270
           HL  V  ++ E   K+++  ++ +RN F +V + S
Sbjct: 52  HLFIVTHQAYELWFKQIIYELDSIRNIFSDVLEES 86


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 374 HLLTVHEKSLEAAHKRLVEVVEDLRNSFVNVSQAS 270
           HL  V  ++ E   K+++  ++ +RN F +V + S
Sbjct: 52  HLFIVTHQAYELWFKQIIYELDSIRNIFSDVLEES 86


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 706 VNLVPVSVAQVMFVAEFVRSAERSVSVLDVRDHFAVEQL 590
           VN +PVS   +   + +V+  +  +  L V++H   + L
Sbjct: 140 VNGIPVSSKTLASQSAYVQQDDLFIGTLTVKEHLIFQAL 178


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 706 VNLVPVSVAQVMFVAEFVRSAERSVSVLDVRDHFAVEQL 590
           VN +PVS   +   + +V+  +  +  L V++H   + L
Sbjct: 140 VNGIPVSSKTLASQSAYVQQDDLFIGTLTVKEHLIFQAL 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,355
Number of Sequences: 336
Number of extensions: 3039
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)