Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00051X
         (336 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   0.65 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    20   6.0  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    20   6.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    20   6.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 271 VDCCCHGSPTP 303
           V+C  HG+PTP
Sbjct: 43  VECSAHGNPTP 53


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 223 SSGCASCRYSR*AETEH 173
           S GC +C Y    E+ H
Sbjct: 33  SQGCKACGYHSPLESNH 49


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = +1

Query: 253 PQHCVTVDCCCHGSPT 300
           P  CV  DC C    T
Sbjct: 157 PTQCVLPDCFCSADGT 172


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = +1

Query: 253 PQHCVTVDCCCHGSPT 300
           P  CV  DC C    T
Sbjct: 164 PTQCVLPDCFCSADGT 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,215
Number of Sequences: 336
Number of extensions: 1371
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)