Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00045
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   7.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.9  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   9.9  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 601 YTQEGSYSRRSCGY 642
           Y Q  +Y   SCGY
Sbjct: 338 YDQSSAYDASSCGY 351


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 374 NGFLRQVILSRCIVFNN 324
           N FLRQV   RC  + N
Sbjct: 168 NVFLRQVFTCRCKDYKN 184


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/21 (28%), Positives = 16/21 (76%)
 Frame = -2

Query: 317 ILFVDSLSNTIDFLVHFSTVM 255
           +LF+   ++T+ F+++ ST++
Sbjct: 346 VLFIQVAADTVLFILNISTII 366


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,985
Number of Sequences: 336
Number of extensions: 3666
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)