Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b08f
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.8  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.8  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   4.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 155 TDFSSAEVQRQDLRVIRKYACKTL 226
           TD SSA+  +    + R YAC T+
Sbjct: 546 TDASSAKAVKNSDHITRIYACATM 569


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 155 TDFSSAEVQRQDLRVIRKYACKTL 226
           TD SSA+  +    + R YAC T+
Sbjct: 546 TDASSAKAVKNSDHITRIYACATM 569


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 155 TDFSSAEVQRQDLRVIRKYACKTL 226
           TD SSA+  +    + R YAC T+
Sbjct: 546 TDASSAKAVKNSDHITRIYACATM 569


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 155 TDFSSAEVQRQDLRVIRKYACKTL 226
           TD SSA+  +    + R YAC T+
Sbjct: 546 TDASSAKAVKNSDHITRIYACATM 569


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 295 SVYT*VPPVVLDTELTVAPASSSKSLAGVLPNDAEVLSLDLC*AEVCL 152
           S Y   P   +D   T + ++ ++S + V PN     S+  C   +CL
Sbjct: 34  SNYLYTPSSTIDLYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCL 81


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 295 SVYT*VPPVVLDTELTVAPASSSKSLAGVLPNDAEVLSLDLC*AEVCL 152
           S Y   P   +D   T + ++ ++S + V PN     S+  C   +CL
Sbjct: 34  SNYLYTPSSTIDLYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCL 81


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 22  HARSSSKFINFINARIY 72
           H  S SK+++FIN   Y
Sbjct: 195 HVPSLSKYLDFINVMAY 211


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 163 EVCLREDRMCCRYSVSSVLTLL 98
           E C R    C  ++V ++LT L
Sbjct: 62  EFCQRNGHNCLDFTVQNILTFL 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,001
Number of Sequences: 336
Number of extensions: 2984
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)