Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C20
         (1146 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.27 

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 113 VXXLXFSLCIFLYICXYXCVXXCVFXLMCLY 205
           V  L F LCI+ + C +      +  L+C+Y
Sbjct: 137 VVPLFFLLCIYYFYCAFIIFTVHLLFLLCIY 167



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 80  WVTSVCVXVXXVXXLXFSLCIFLYICXYXCVXXCVFXLMCLY 205
           ++  +CV       + F++ +   +C Y  V   +F L+C+Y
Sbjct: 107 FIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVP-LFFLLCIY 147



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +2

Query: 95  CVXVXXVXXLXFSLCIFLYICXYXCVXXCVFXLMCLYXC 211
           C  +     L F LCI+ + C +      +F +  L+ C
Sbjct: 151 CAFIIFTVHLLFLLCIYHFFCAF-----IIFTMHLLFCC 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,739
Number of Sequences: 336
Number of extensions: 2633
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33300331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)