Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A03
         (877 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   3.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   3.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   3.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   7.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.6  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 428 DTEMTTQSVASQLELQRLHTGRT 496
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 428 DTEMTTQSVASQLELQRLHTGRT 496
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 428 DTEMTTQSVASQLELQRLHTGRT 496
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 342 SVALVSAPSITPSAYIIPTIVVPV 271
           SV+  S PSI+PS   +P  + P+
Sbjct: 195 SVSPASLPSISPSGGFLPKWLPPL 218



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 345 FSVALVSAPSITPSAYIIPTI 283
           F  ALV+APS++P++  +P+I
Sbjct: 186 FISALVNAPSVSPAS--LPSI 204


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 696 ASNTAIAARDPD 661
           ASN A++ RDPD
Sbjct: 7   ASNPAVSERDPD 18


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 487 WTYCTSRNCCHTAETNAVSLSRSYRGC 567
           W Y  SR   H +  +  S +  Y GC
Sbjct: 84  WVYYESRAHIHCSVKSESSQAAKYGGC 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,972
Number of Sequences: 336
Number of extensions: 4232
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)