Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0059
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    25   0.71 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.71 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   3.8  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   6.7  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   6.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.8  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 128 RELAQIIYFNFDIRQ*FVFD 187
           RE+  I++F FD +Q  VFD
Sbjct: 146 REMPLIVWFPFDYKQPVVFD 165


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 522 VFPPHFYVLFGFFFPVSCIFY 584
           +FP HFY  F   +P+   FY
Sbjct: 307 IFPTHFYCAFS-LYPLKSTFY 326


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 66  DRWLRKQLTLDTIINDKS 119
           ++W R ++ LD   NDKS
Sbjct: 290 EKWSRVEMALDNWKNDKS 307



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 508 ILTTKFFLHTFMYCSVFS 561
           ++T  FF H+FM   +FS
Sbjct: 93  LITPLFFFHSFMTSVLFS 110


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 269 CPRRCWKSKP 240
           CPRR W S P
Sbjct: 120 CPRREWSSPP 129


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 529 LHTFMYCSVFSFLSVVYSMISVLIAYFVTYQIM 627
           LH  +  SV  F  V Y+++  ++    TY ++
Sbjct: 348 LHQKVQFSVLGFFVVDYTLLYSIVGAVTTYLVI 380


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 269 CPRRCWKSKP 240
           CPRR W S P
Sbjct: 276 CPRREWSSPP 285


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 495 CFFLNINNKVFPP 533
           CF L + NK  PP
Sbjct: 525 CFSLKLKNKKLPP 537


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,133
Number of Sequences: 336
Number of extensions: 2844
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)