Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0193
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.0  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   3.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   3.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   3.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   3.6  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +1

Query: 241 RAGNGVYRQNASAPSIFRAG--CFGR*VVAHSLADSDFHGHRPAVMSDQRLS 390
           + G     + A AP++  AG     R       A    H HRPA+   +R++
Sbjct: 266 KCGGEEEAERAPAPAVRAAGDAAAARGAARADGAGGPLHDHRPALAQQRRVA 317


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 121 PRSAPTEAPSGLTPR 165
           PRS+P E  S L+P+
Sbjct: 154 PRSSPAETASSLSPQ 168


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 362 GRWPWKSESAKECATTHLPKQPAL 291
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 362 GRWPWKSESAKECATTHLPKQPAL 291
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 121 PRSAPTEAPSGLTPR 165
           PRS+P E  S L+P+
Sbjct: 145 PRSSPAETASSLSPQ 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,157
Number of Sequences: 336
Number of extensions: 3148
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)