Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20070
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    25   0.43 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.0  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.0  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   9.3  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 519 LSLSVGIPCKLYSKIFSTSFLFVFIKAFLCLSNNLFC 409
           L+LS+G+   +YSK F  + + + I        +L+C
Sbjct: 41  LALSIGVVVSIYSKSFHRNEIHIKIVLMFFKEASLYC 77


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 51  KVEYSKSSRATCPEC 95
           KV   +  R TCP+C
Sbjct: 222 KVHIREDKRLTCPKC 236


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 488 CTPKFFLHLFYLYSLKHFY 432
           C   F LHL +L  + +FY
Sbjct: 198 CLDYFTLHLLFLPCIYYFY 216


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 469 RKNFGVQFTGNPYRKTECFDR 531
           R  F V+   +P   +ECFDR
Sbjct: 163 RDYFSVKKLPSPASDSECFDR 183


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 15  APESDNSALKDFKVEYSKSSRAT 83
           AP++D    K+F +E SK    T
Sbjct: 345 APQTDRLCNKNFVIEASKPHERT 367


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,162
Number of Sequences: 336
Number of extensions: 2915
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)