Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20003
         (371 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   1.8  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   5.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    20   9.4  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 223 IRRLTASLITSPFFSFRYSEH 161
           +RRL  SL  S  FS + SEH
Sbjct: 147 LRRLEMSLEKSGLFSSKTSEH 167


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
          protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -1

Query: 74 ALEASAHTARTKANKVSLILAQW 6
          AL  S H    K +K+    A W
Sbjct: 11 ALLISTHQTEAKTDKILCFFASW 33


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 299 YFPIQFXVIFTEQTVKL 349
           +FPI + ++F+E  + L
Sbjct: 700 FFPIDYSLVFSETKLLL 716


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,220
Number of Sequences: 336
Number of extensions: 1687
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)