Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30114
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.6  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 343 SLHLRGEFNGWDSKSHPFA 399
           S HL+ E +G+ S +HPF+
Sbjct: 353 SHHLKQEPSGFTSSNHPFS 371


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 277 YYGPQFNQDGSVTWREWAPGA-HSLHL 354
           YYGPQ   DG    +E+ P +  S+H+
Sbjct: 96  YYGPQQQMDG----QEYRPDSPSSMHM 118


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 413  PYSFLANGWLFESHPLNSPRRCRL 342
            PY++L+N W+         R+ RL
Sbjct: 2626 PYAYLSNQWVSYDDIAEIRRKSRL 2649


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,541
Number of Sequences: 336
Number of extensions: 3246
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)