Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30109
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   0.30 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.5  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   8.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 195 PILGAKDDVAPTSPPT 148
           PIL  K  V+PT+PPT
Sbjct: 85  PILAEKVSVSPTTPPT 100


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 320 EQQLSGLVCFELSAA 276
           E+ + GLVCF L A+
Sbjct: 400 EEVVLGLVCFRLKAS 414


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -2

Query: 479 SQKGXGPLICFS*SSQFRLHPQGRCCRCV*YFSAFYDHE 363
           S +   P IC        L   G  C+C   F+  Y HE
Sbjct: 29  SGRNSAPSICGEHGHCVNLPGVGHRCQCQPGFTGKYCHE 67


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 117 QMKLKS*ICDVSAGKSVPHHLWPLK 191
           Q  ++  +C++S    +P H+W  K
Sbjct: 273 QFNIEMFLCNMSLLTVIPIHVWTSK 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,493
Number of Sequences: 336
Number of extensions: 2707
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)