Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30072
         (587 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 492 APALAPRPC*RLRHLPT*VRPGARRFLNVPLQNIKTDC 379
           +PA AP P       P  V   A   L++P +    DC
Sbjct: 29  SPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYDC 66


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 226 FVTLLIFIYIIYYRGVCIESASECV 152
           ++ LLIF Y+I   G  I +  +C+
Sbjct: 121 WIWLLIFAYLIPEVGTWIRAVRKCL 145


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 226 FVTLLIFIYIIYYRGVCIESASECV 152
           ++ LLIF Y+I   G  I +  +C+
Sbjct: 121 WIWLLIFAYLIPEVGTWIRAVRKCL 145


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 229 YFVTLLIFIYIIYY 188
           YFV  L F+  IYY
Sbjct: 135 YFVVPLFFLLCIYY 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,240
Number of Sequences: 336
Number of extensions: 2724
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)