Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30061
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.9  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 462 SELAYLTPWTAPTPYPSPDLTQ*PLRSTSPYQSTGPYRYPYLMQYPYPWSNKLEYQSPLR 641
           +E   ++P T PTP P P+    P +  S  +    +    L++    +++ + Y S LR
Sbjct: 88  AEKVSVSPTTPPTPSPPPEERLTPSKDASSKRIXTAFTSTQLLELEREFASNM-YLSRLR 146


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 718 DDGFHIRYSHWSGYWYGN 665
           D  FH +Y+H+   +YG+
Sbjct: 437 DPAFHNQYAHYPAEYYGH 454


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,266
Number of Sequences: 336
Number of extensions: 2217
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)