Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30053
         (877 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    26   0.45 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   4.2  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.5  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 453 VKPTLKKVSKYENKFAKLQ-KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGD 277
           +K  +KK S++     KL  +K  E    +     +KKE   E++DK+K      G+  D
Sbjct: 196 IKEIVKKHSQFIGYPIKLVVEKEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDED 255

Query: 276 QKVKEEE 256
           +  K+E+
Sbjct: 256 EDTKKED 262



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -2

Query: 450 KPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSK 292
           KP ++ V + E++  K + K  +       K +K+K +T +EE  + KP W++
Sbjct: 244 KPKIEDVGEDEDEDTKKEDKKKK-------KTIKEK-YTEDEELNKTKPIWTR 288


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 198 NYVMCPIVCLSAKRLKFYLSGC 133
           N   C   C SAKR KF  S C
Sbjct: 188 NKCCCLRTCSSAKRPKFENSSC 209


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 303 DWSKGKPGDQKVKEEE 256
           DW KG+  D+++KE E
Sbjct: 233 DWYKGRLTDEQLKELE 248


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 576 DYHERIARLEDEKFDLEYIVKR 511
           DYH    R     F +EY+V R
Sbjct: 835 DYHGAWERQTGHNFTMEYLVSR 856


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,529
Number of Sequences: 336
Number of extensions: 3165
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)