Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30046X
         (535 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    27   0.14 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.2  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   3.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.0  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -2

Query: 471 EANFVKPTLKKVSKYENKFAKLQ-KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKG 295
           E + +K  +KK S++     KL  +K  E    +     +KKE   E++DK+K      G
Sbjct: 192 EEHKIKEIVKKHSQFIGYPIKLVVEKEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVG 251

Query: 294 KPGDQKVKEEE 262
           +  D+  K+E+
Sbjct: 252 EDEDEDTKKED 262



 Score = 23.4 bits (48), Expect = 1.3
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -2

Query: 456 KPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSK 298
           KP ++ V + E++  K + K  +       K +K+K +T +EE  + KP W++
Sbjct: 244 KPKIEDVGEDEDEDTKKEDKKKK-------KTIKEK-YTEDEELNKTKPIWTR 288



 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 390 EFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGK 292
           EF+ +  + V K+     E+E+++KK +  K K
Sbjct: 524 EFDGKTLVSVTKEGLELPEDEEEKKKREEDKAK 556


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 204 NYVMCPIVCLSAKRLKFYLSGC 139
           N   C   C SAKR KF  S C
Sbjct: 188 NKCCCLRTCSSAKRPKFENSSC 209


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 309 DWSKGKPGDQKVKEEE 262
           DW KG+  D+++KE E
Sbjct: 233 DWYKGRLTDEQLKELE 248


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 356  KRRNSPWKRKTKRKSLTG 303
            K++    KRK K+KSL G
Sbjct: 1077 KKQAEEAKRKAKQKSLLG 1094


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 356  KRRNSPWKRKTKRKSLTG 303
            K++    KRK K+KSL G
Sbjct: 1077 KKQAEEAKRKAKQKSLLG 1094


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 356  KRRNSPWKRKTKRKSLTG 303
            K++    KRK K+KSL G
Sbjct: 1077 KKQAEEAKRKAKQKSLLG 1094


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 356  KRRNSPWKRKTKRKSLTG 303
            K++    KRK K+KSL G
Sbjct: 1077 KKQAEEAKRKAKQKSLLG 1094


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,922
Number of Sequences: 336
Number of extensions: 2262
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)