Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0066
         (854 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.1  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   5.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +1

Query: 370 CEEWYHGDCINISERESKYIKNYFCDRCREEDPTLKTRFRPQKRENG 510
           C+E     C+++  R    +    C   R+E    K + +P    NG
Sbjct: 240 CQECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKPNSTTNG 286



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 789 EPYGPEGSVGR 821
           +PY P G +GR
Sbjct: 145 DPYSPNGKIGR 155


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 602 TIFYYSSLGRFIFRMI 555
           T++Y+ SLG  I R++
Sbjct: 318 TVYYFISLGLLILRLV 333


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,266
Number of Sequences: 336
Number of extensions: 3724
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)