Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0054
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   8.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 542 PFPVHECPTPTKAPEFQQ 595
           PFP  + P P  +PE  Q
Sbjct: 166 PFPAGQYPYPILSPEMSQ 183


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 542 PFPVHECPTPTKAPEFQQ 595
           PFP  + P P  +PE  Q
Sbjct: 58  PFPAGQYPYPILSPEMSQ 75


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 12  PRDGPIDRRSLRLRGRCGP 68
           PR  P DR  +R  G  GP
Sbjct: 81  PRFPPYDRMDIRAAGYYGP 99


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 67  QLMAKGADVTVKNISNENALDL 132
           +L A+  D     +SNENALD+
Sbjct: 138 KLAARYIDFLYHVLSNENALDV 159


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 539 PPFPVHECPTPTKAP 583
           PP+ +   PTP+++P
Sbjct: 332 PPYQISAQPTPSQSP 346


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,429
Number of Sequences: 336
Number of extensions: 3398
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)