Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0051
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   6.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 414 PKPPDGWAANCPLPTPMGGSRSPKQGSLKLAAPLYRCPGSEF 539
           P PP G   +  +  P G S +P + + ++     R P S+F
Sbjct: 212 PYPPPGSLGSMGVSVPCGTSGNPLEWTGQVTVRKKRKPYSKF 253


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 88  TKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQT 189
           TK++I+N  +   +   +     PTP+ +  Q T
Sbjct: 374 TKYQILNAINAALKSDEIPPEPVPTPEPQPTQTT 407


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 577 VDAYCPHLGANLAVGGTVRGSCIECPFHKWRFN 675
           + AY P   A++     V+    + P HKW+ N
Sbjct: 200 IGAYGPEKSASIPKKKEVKEEIEDEPDHKWKKN 232


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 687 CVSLPGSDIAPKGVS 731
           CVS+P  + +P+G S
Sbjct: 34  CVSMPSMNCSPQGAS 48


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 508  AANFKLPCFGDREPPIGVGRGQFAAHP 428
            A  ++LP  G  +P        FAA+P
Sbjct: 1262 AQKYQLPKMGGPQPYSACSENAFAAYP 1288


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 216 LYSFGVAEKCLLFLLSV 166
           +Y F    KCLLF +SV
Sbjct: 298 IYMFVSVWKCLLFFVSV 314


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 216 LYSFGVAEKCLLFLLSV 166
           +Y F    KCLLF +SV
Sbjct: 298 IYMFVSVWKCLLFFVSV 314


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 216 LYSFGVAEKCLLFLLSV 166
           +Y F    KCLLF +SV
Sbjct: 298 IYMFVSVWKCLLFFVSV 314


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 216 LYSFGVAEKCLLFLLSV 166
           +Y F    KCLLF +SV
Sbjct: 298 IYMFVSVWKCLLFFVSV 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,833
Number of Sequences: 336
Number of extensions: 4701
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)