Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0098
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    21   6.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.8  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   8.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 374 GTCVVDVYGPRLPPWVVRS 430
           GTC V + G R+PP ++++
Sbjct: 348 GTCFVQLIGMRVPPEMMQA 366


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -2

Query: 297 YYCFTAEIGRVVVPSRAESQDVLPPVKLKCSSVLIFKC 184
           YYC     G V +  R  +  V    KL C    + KC
Sbjct: 438 YYCLAYNGGFVPLEQRCNAGLVFDEEKLWCDYPEVVKC 475


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 491 IRPIVSRITIHWPVVLQRRDWENPWRY 571
           IRP+     I   + L RR  ENP  Y
Sbjct: 484 IRPMYDAFLIDQSLALNRRRDENPRNY 510


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 491 IRPIVSRITIHWPVVLQRRDWENPWRY 571
           IRP+     I   + L RR  ENP  Y
Sbjct: 484 IRPMYDAFLIDQSLALNRRRDENPRNY 510


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 471 RVFLLLLFIAFIG 433
           R+FL+++ IAF+G
Sbjct: 3   RMFLIVVLIAFVG 15


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -1

Query: 166 VVVPQNAYSSRAWPAYVRLRDWNCVR 89
           V VPQ      A P  V    W C R
Sbjct: 34  VQVPQGGRRRAARPGVVTTPRWGCAR 59


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 327 RLPHLSNRNAYYC 289
           R+PH  N NA+ C
Sbjct: 336 RMPHKCNGNAHNC 348


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 327 RLPHLSNRNAYYC 289
           R+PH  N NA+ C
Sbjct: 343 RMPHKCNGNAHNC 355


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 240 VTPHGKVPPP 269
           V PH +VPPP
Sbjct: 14  VLPHQEVPPP 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,822
Number of Sequences: 336
Number of extensions: 3701
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)