Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0013
         (384 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   1.4  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    21   4.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   7.4  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 213 PVRKSVGINCHEFDFFF 163
           P  +S+G+ C E  FFF
Sbjct: 369 PALRSIGLKCLEHLFFF 385


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 162 LEHCFAFYIFLILSK*KRNS 103
           LEHCF+   ++  SK + NS
Sbjct: 157 LEHCFSMLNYVYSSKCENNS 176



 Score = 19.8 bits (39), Expect = 9.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 203 NQWALIVMNLIFFFWNTVSL 144
           N+W  I +NL+  + +T  L
Sbjct: 121 NEWTKIEINLLKHYQSTTDL 140


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 80  KQPLYNGIEFLFYFDKI 130
           K+P+YN ++ L Y +++
Sbjct: 35  KKPVYNDLQELKYMERV 51


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 259 SQNLPPDRNLDSLRR 215
           S N  PD N D LRR
Sbjct: 135 SPNRKPDDNQDHLRR 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,179
Number of Sequences: 336
Number of extensions: 1638
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)