Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0118
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    27   0.16 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    24   1.2  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    24   1.5  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   2.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   3.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +1

Query: 304 FNTEITIKSVHEHDYYNRQNNLRLYTLAIYRYEINSYKI*LVITMIYTVEYKLQFINIPI 483
           FNT I I  V   DY  R  ++R + + +     N  K+ L  +  YT+  K +   I  
Sbjct: 134 FNTNI-ISLVQNKDYVERDTDIRRFLIKVTILHPNIVKLKLDTSEGYTLSVKPRDGEIVA 192

Query: 484 NKHSKLF 504
           N  +K F
Sbjct: 193 NITAKTF 199


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 466 FINIPINKHSKLFNRKNEIYFNNSF 540
           FIN+P  +H+ +  +   IYFN  F
Sbjct: 131 FINLPFLEHNLIRLKNCVIYFNRIF 155


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/56 (21%), Positives = 25/56 (44%)
 Frame = +1

Query: 304 FNTEITIKSVHEHDYYNRQNNLRLYTLAIYRYEINSYKI*LVITMIYTVEYKLQFI 471
           F   +TI  V+  D+Y + + +RL       + + +  I  ++T +   +   Q I
Sbjct: 41  FTLGVTISGVYRTDFYKKLSPMRLIVQTCLDFLLLALNISTILTTVRKQQQWAQLI 96


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 237 IYLLILDQFYIHHE 196
           IY++  D FY HH+
Sbjct: 177 IYIIFFDMFYQHHK 190


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 760 IRSSLFNKTRYPHFSRR*FFRNKCAFFVGVRRHF*FKMAADRRARC 623
           +  +LF KTRYP      F R + A  + +          +RRA+C
Sbjct: 83  VLEALFGKTRYPDI----FMREEVALKINLPESRVQVWFKNRRAKC 124


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 169 TFLVLLLYQIVFNGRLLSPNRSIKLRLLNIFC 74
           TF+++L   ++  G LL     +K   + +FC
Sbjct: 78  TFVIVLGSGVISKGTLLFMTSQLKPDKVTVFC 109


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 169 TFLVLLLYQIVFNGRLLSPNRSIKLRLLNIFC 74
           TF+++L   ++  G LL     +K   + +FC
Sbjct: 78  TFVIVLGSGVISKGTLLFMTSQLKPDKVTVFC 109


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 169 TFLVLLLYQIVFNGRLLSPNRSIKLRLLNIFC 74
           TF+++L   ++  G LL     +K   + +FC
Sbjct: 78  TFVIVLGSGVISKGTLLFMTSQLKPDKVTVFC 109


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 169 TFLVLLLYQIVFNGRLLSPNRSIKLRLLNIFC 74
           TF+++L   ++  G LL     +K   + +FC
Sbjct: 78  TFVIVLGSGVISKGTLLFMTSQLKPDKVTVFC 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,916
Number of Sequences: 336
Number of extensions: 3551
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)