Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0114
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.4  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   3.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.3  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 704 YPGPPLEKVLTNFPDGSGHHYGKRKDSVAQKAF 606
           Y   P E    N   G+ HH G + DSV   A+
Sbjct: 157 YSRHPYESWPFNTMSGATHHGGIKSDSVTSNAW 189


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 358 STDPYGVLPLWRSNDLN 408
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -3

Query: 327 QMWISKQEYDESGPSIVHRKCF*TPARRCLQQPAAGCSIQA 205
           Q  +  QEY    PS +H      P     Q   A C +QA
Sbjct: 100 QQQMDGQEYRPDSPSSMHMANTAAPNGHQTQVVYASCKLQA 140


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 338 LPSNRCGSRNRSTTSLAPPLYTG 270
           LP++RC SR  S + + P   +G
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSG 101



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 680 VLTNFPDGSGHHYGKRKDSVAQKA 609
           +L ++     HHYG+R+ S ++ +
Sbjct: 788 LLRSYHQQQSHHYGRRERSGSESS 811


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,292
Number of Sequences: 336
Number of extensions: 4083
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)