Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0064
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    29   0.033
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 29.1 bits (62), Expect = 0.033
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 315 YAHTPGTTIELTCEAAGSPAPSVHWFKNDSS 407
           +++T G  +E  C A G+P P + W ++D +
Sbjct: 35  FSNTTGAVVE--CSAHGNPTPDIIWVRSDGT 63



 Score = 28.7 bits (61), Expect = 0.043
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 327 PGTTIELTCEAAGSPAPSVHW 389
           PG ++ L C A+G+P P + W
Sbjct: 427 PGNSVFLKCIASGNPTPEITW 447



 Score = 27.1 bits (57), Expect = 0.13
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 339 IELTCEAAGSPAPSVHWFK 395
           + L C A G P+PS  W+K
Sbjct: 250 VALLCPAQGFPSPSFRWYK 268



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 318 AHTPGTTIELTCEAAGSPAPSVHW 389
           A   G+   + C+A G P P V W
Sbjct: 709 AFAQGSDAAVECKADGFPRPVVTW 732



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +3

Query: 330 GTTIELTCEAAGSPAPSVHWFKN 398
           G     TC   G+P  ++ W K+
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKD 364



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 330 GTTIELTCEAAGSPAPSVHW 389
           G T+ + C  AG P  SV W
Sbjct: 525 GGTLIVHCPFAGHPVDSVVW 544



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 582 CIVDHSVGSRSLE 544
           C+V++SVG  S+E
Sbjct: 307 CVVNNSVGGESVE 319



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 339  IELTCEAAGSPAPSVHW 389
            + L C A G P P + W
Sbjct: 1324 VTLPCLAVGLPPPVITW 1340


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +2

Query: 350 LRSCRISSTISTLVQERLFSLRVDVESNELIDSKPDIYCENFLQLFI 490
           L  CR     + ++ E +  L     +  L+ SKPD+    ++  FI
Sbjct: 263 LEKCRPDPPQNLVINESIIDLSQQTYNVHLMWSKPDLIPNYYIAHFI 309


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 334 VPGVCAYDGRGPCVIDKYL 278
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 334 VPGVCAYDGRGPCVIDKYL 278
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 276 HKYLSITQGPLPSYAHTPGT 335
           H+Y   T  PLPS  H+  T
Sbjct: 392 HQYGYNTLSPLPSSVHSHST 411


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,969
Number of Sequences: 336
Number of extensions: 2478
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)