Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0048
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    28   0.061
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    28   0.061
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   9.2  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.2  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 0.061
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 144 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWK 254
           N+ +  ++ +SF  K CN+     P+ F  P   K LWK
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWK 43


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 0.061
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 144 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWK 254
           N+ +  ++ +SF  K CN+     P+ F  P   K LWK
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWK 43


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 53  QMTTAIDHYGLIAK 12
           Q+ +A+D YGL+A+
Sbjct: 137 QLFSAVDPYGLVAQ 150


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 587 VVNGVVAFDTFSPASLVILLSFFS 516
           ++NG+VA      + +   LSFFS
Sbjct: 111 ILNGIVASSKLRASLISSCLSFFS 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,529
Number of Sequences: 336
Number of extensions: 3664
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)