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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0038
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   2.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.6  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   8.7  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   8.7  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 518 FISEWIVDLVDWNQIYLLRNSTP 586
           +I   ++ ++ W   +L RN+TP
Sbjct: 75  YIPSGLIVIISWVSFWLNRNATP 97


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 83   INCMFVF*CAFHCNENTTWNRVKKI 157
            +NC+++F C F   E  +  R+K +
Sbjct: 1129 LNCVYLFLCGFCVYEFASDERIKLV 1153


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 583 TGRVCKVGLLMCK 621
           TG+VC V ++ CK
Sbjct: 130 TGKVCDVEMVSCK 142


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +2

Query: 260 LIMLCLF*THSYDSELVF 313
           +I+ C++ T +YDS +++
Sbjct: 332 MILYCVYTTATYDSFMIY 349


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +2

Query: 260 LIMLCLF*THSYDSELVF 313
           +I+ C++ T +YDS +++
Sbjct: 57  MILYCVYTTATYDSFMIY 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,615
Number of Sequences: 336
Number of extensions: 3417
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).