Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0025
         (588 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   2.5  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   5.8  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   5.8  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   5.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.7  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.7  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 572 LKALNSHSLTRYC*SVCCLSKTI 504
           LKA NS+ L   C  +C LS+ +
Sbjct: 183 LKAQNSNLLKSVCADLCLLSECV 205


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 225 DPIVFCNFSSRPLLQS*KVSRLFNCCAH 142
           +PI++  FS  P++ +  +   F  CAH
Sbjct: 152 EPILYLIFSYCPIVTTGIIKIQFATCAH 179


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 138 YRVHNN*TIWKPFNFEEADEKKNCRRRL 221
           Y++ N   I  P++FE+ D +K+  +++
Sbjct: 18  YKICNIFGIVPPYSFEKPDSQKSLWKKI 45


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 138 YRVHNN*TIWKPFNFEEADEKKNCRRRL 221
           Y++ N   I  P++FE+ D +K+  +++
Sbjct: 18  YKICNIFGIVPPYSFEKPDSQKSLWKKI 45


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 303 PVRSTPSASTMVSSQPLIMAEGTASPNVTLTP 398
           P RS+P  +  VS  P      +  P   LTP
Sbjct: 80  PKRSSPILAEKVSVSPTTPPTPSPPPEERLTP 111


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 343 LETIVDALGVERT 305
           L TI  ALGVERT
Sbjct: 37  LSTIALALGVERT 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,846
Number of Sequences: 336
Number of extensions: 3114
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)