Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0094
         (792 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.69 
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   4.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   4.9  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   6.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = -3

Query: 157  WDSTPLVPKWTVCTLLSATLLEGTFSSDVDNVVTRNF 47
            W ST   P WT  T    T    T +S      T N+
Sbjct: 1043 WSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNW 1079


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 388 SSFEISWFSVVFDCCCFDAFLASLFLLMRNISK 290
           S F + W S++F     DA+     +L +N+ K
Sbjct: 239 SIFGLVWISLIFVVLIGDAYAVLNSVLFQNVYK 271


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 388 SSFEISWFSVVFDCCCFDAFLASLFLLMRNISK 290
           S F + W S++F     DA+     +L +N+ K
Sbjct: 239 SIFGLVWISLIFVVLIGDAYAVLNSVLFQNVYK 271


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 163 GLWDSTPLVPKW 128
           G W+STP + +W
Sbjct: 370 GCWNSTPSIVQW 381


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,844
Number of Sequences: 336
Number of extensions: 3968
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)