Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0087
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   3.1  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   4.1  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   4.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   5.4  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   5.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   5.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   5.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.2  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.2  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 598 TSMKLANDLVTDASRVLPFVSRITITRLYLSSCF 497
           T++     L++  +  LP +S +    +YL +CF
Sbjct: 105 TTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCF 138


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 293 CGPLRTAMGLSLSIPSIKTG 352
           C   +T +G+S S+  +KTG
Sbjct: 283 CNEGQTILGISYSLEKLKTG 302


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 293 CGPLRTAMGLSLSIPSIKTG 352
           C   +T +G+S S+  +KTG
Sbjct: 283 CNEGQTILGISYSLEKLKTG 302


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 17/85 (20%), Positives = 35/85 (41%)
 Frame = +3

Query: 396 LTLYTTLKEKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTK 575
           L+ Y T ++ GI+   K  +   +   + +   KK+DD   L  ++          +  +
Sbjct: 86  LSQYDTCQQ-GIYPENKTLINETSLQLDENKLDKKNDDSPALRALLTRPQAKKTPPNQYE 144

Query: 576 SFANFIDVNGTVVQNIVSNEITKLY 650
           +F  + + N +  +N VS      Y
Sbjct: 145 NFQQYDNNNFSAEENSVSEPPANFY 169


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 17/85 (20%), Positives = 35/85 (41%)
 Frame = +3

Query: 396 LTLYTTLKEKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTK 575
           L+ Y T ++ GI+   K  +   +   + +   KK+DD   L  ++          +  +
Sbjct: 86  LSQYDTCQQ-GIYPENKTLINETSLQLDENKLDKKNDDSPALRALLTRPQAKKTPPNQYE 144

Query: 576 SFANFIDVNGTVVQNIVSNEITKLY 650
           +F  + + N +  +N VS      Y
Sbjct: 145 NFQQYDNNNFSAEENSVSEPPANFY 169


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 348 LVLIICVSSYFILMGILTLYTTLKEKGIFVVA 443
           ++L   V+SY  +  I+    + KE G+F++A
Sbjct: 288 ILLTTIVASYGSVTEIMDQGISFKEAGLFMIA 319


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 348 LVLIICVSSYFILMGILTLYTTLKEKGIFVVA 443
           ++L   V+SY  +  I+    + KE G+F++A
Sbjct: 288 ILLTTIVASYGSVTEIMDQGISFKEAGLFMIA 319


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 435 VVAKEKVGNNTRVWEASSYVKKHDDKYNLV-IVMRDT 542
           VVA E+VG++  V E     +    K NLV   ++DT
Sbjct: 543 VVAMERVGSHVNVSEILKMDQNGQIKRNLVDAPLKDT 579


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 543 NGNTREASVTKSFANF 590
           NG+ +   V KSF NF
Sbjct: 277 NGSRKNLDVMKSFVNF 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,680
Number of Sequences: 336
Number of extensions: 3378
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)